Soler, C.M.Tojo and Saidou, A. and Hamadou, T.V.C. and Pautasso, M. (2012) Correspondence between genetic structure and farmers' taxonomy – a case study from dry-season sorghum landraces in northern Cameroon. Plant Genetic Resources. pp. 1-14.
![[img]](http://eprints.icrisat.ac.in/style/images/fileicons/application_pdf.png) |
PDF (First View)
Restricted to ICRISAT researchers only |
Abstract
The study of the genetic structure of cultivated plant populations maintained by farmers is of great importance for evolutionary and conservation biology. Such studies help understand the bases of crop evolution and conservation in relation to farmers' practices. In this study, we assessed the genetic structure underlying landrace diversity of dry-season sorghum. This crop constitutes a historical model of innovation developed by farmers to extend sorghum cultivation to the dry season. Two types of dry-season sorghum are cultivated. We aimed to assess the link between farmers' taxonomy and molecular genetic structure. We collected both types of dry-season sorghum in two villages of northern Cameroon which represented 20 landraces. These landraces were genotyped using eight polymorphic microsatellite markers. This study compared two clustering methods: a Bayesian method (STRUCTURE) which is based on explicit genetic assumptions and the discriminant analysis of principal component method. The latter, more recently proposed, is based on the combination of principal component analysis and discriminant analysis. We noticed a general congruence between these two methods. We also used both methods to infer the genetic structure of our sample. Our results showed strong genetic structuring of the landraces, with K = 14 genetic clusters. We then analysed the fit between farmers' taxonomy and genetic structure. The data suggested that each type and each landrace corresponds to a given genetic entity. This pattern was robust across both villages, despite differences in cultural practices.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | farmer's practices; genetic diversity; multivariate analysis; simple sequence repeat; sorghum; structure inference |
| Author Affiliation: | Institut Supérieur du Sahel, Université de Maroua, BP 46, Maroua, Cameroon |
| Subjects: | Statistics and Experimentation Crop Improvement |
| Divisions: | Sorghum |
| Depositing User: | Mr. SanatKumar Behera |
| Date Deposited: | 29 Nov 2012 13:57 |
| Last Modified: | 29 Nov 2012 13:57 |
| Official URL: | http://dx.doi.org/10.1017/S1479262112000342 |
| URI: | http://eprints.icrisat.ac.in/id/eprint/8940 |
Actions (login required)
 |
View Item |
