Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum

Nelson, J.C. and Wang, S. and Wu, Y. and Li, X. and et al, . (2011) Single-nucleotide polymorphism discovery by high-throughput sequencing in sorghum. BMC Genomics, 12 (352). pp. 1-15.

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Abstract

Eight diverse sorghum (Sorghum bicolor L. Moench) accessions were subjected to short-read genome sequencing to characterize the distribution of single-nucleotide polymorphisms (SNPs). Two strategies were used for DNA library preparation. Missing SNP genotype data were imputed by local haplotype comparison. The effect of library type and genomic diversity on SNP discovery and imputation are evaluated.

Item Type: Article
Uncontrolled Keywords: SNPs, Sorghum, Genotyping,
Author Affiliation: Department of Plant Pathology, Kansas State University, 4024 Throckmorton Plant Sciences Center, Manhattan KS 66506, USA
Subjects: Crop Improvement
Divisions: Sorghum
Depositing User: Mr Siva Shankar
Date Deposited: 23 Oct 2012 05:28
Last Modified: 23 Oct 2012 05:28
Official URL: http://www.biomedcentral.com/1471-2164/12/352
URI: http://eprints.icrisat.ac.in/id/eprint/8498

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