Duan, X. and Schmidt, E. and Li, P. and et al, . (2012) PeanutDB: an integrated bioinformatics web portal for Arachis hypogaea transcriptomics. BMC Plant Biology, 12. 12 p..
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Abstract
The peanut (Arachis hypogaea) is an important crop cultivated worldwide for oil production and food sources. Its complex genetic architecture (e.g., the large and tetraploid genome possibly due to unique cross of wild diploid relatives and subsequent chromosome duplication: 2n = 4x = 40, AABB, 2800 Mb) presents a major challenge for its genome sequencing and makes it a less-studied crop. Without a doubt, transcriptome sequencing is the most effective way to harness the genome structure and gene expression dynamics of this non-model species that has a limited genomic resource.
| Item Type: | Article |
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| Additional Information: | This project was funded partially by the NIH-AREA (1R15GM94732-1 A1 to CL), Botany Department, and Office for the Advancement of Research and Scholarship (OARS), Miami University. Illumina sequencing is funded by the Major National Basic Research and Development Program of China (973 Program, No. 2009CB118902 to JZ) and National High Technology Research and Development Program of China (863 Program, No. 2011AA10A203 to JZ). Special thanks go to Institute for Plant Breeding, University of Georgia for submitting their peanut 454 sequences data to NCBI SRA so that we are able to integrate them into our PeanutDB. |
| Uncontrolled Keywords: | Peanut, Arachis hypogaea, Transcriptome sequencing, Transcriptome assembly, Database, PeanutDB, SNP, SSR, Functional annotation |
| Author Affiliation: | State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China |
| Subjects: | Social Sciences > Agricultural Extension,Technology, ICT Statistics and Experimentation |
| Divisions: | Groundnut |
| Depositing User: | Mr Siva Shankar |
| Date Deposited: | 21 Jun 2012 04:16 |
| Last Modified: | 21 Jun 2012 04:16 |
| Official URL: | http://www.biomedcentral.com/content/pdf/1471-2229... |
| URI: | http://eprints.icrisat.ac.in/id/eprint/6139 |
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