Genome-Wide SNPs Identification and Determination of Proteins Associated with Stress Response in Sorghum (Sorghum bicolor L. Monech) Accessions

Fadoul, H.E. and Siddig, M.A.E. and Abdalla, A.W.H. and Hussein, A.A.E. (2017) Genome-Wide SNPs Identification and Determination of Proteins Associated with Stress Response in Sorghum (Sorghum bicolor L. Monech) Accessions. American Journal of Plant Sciences, 8 (7). pp. 1624-1631.

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Abstract

Current efforts in sorghum breeding programs are exploiting genotyping-bysequencing (GBS) data to provide full-genome scans for desired traits. The aim of this study was to utilize GBS approach for the identification of genomic regions associated with stress response in sorghum (Sorghum bicolor L. Monech) accessions. DNA samples of twenty sorghum accessions, having different response to drought, were used to prepare GBS libraries for sequencing. SNPs were called using the TASSELGBS pipeline and the tags that present at least 10 times in the dataset were considered and aligned to the reference genome of Sorghum bicolor......

Item Type: Article
Uncontrolled Keywords: SNPs, Sorghum, Stress Response, GBS
Author Affiliation: Department of Botany, Faculty of Science, University of Khartoum, Sudan
Subjects: Crop Improvement
Divisions: Sorghum
Depositing User: Mr B Krishnamurthy
Date Deposited: 07 Nov 2017 03:33
Last Modified: 07 Nov 2017 03:33
Official URL: https://doi.org/10.4236/ajps.2017.87112
URI: http://eprints.icrisat.ac.in/id/eprint/15159

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